rs28233607 SNP Detail

Summary

• ID
  rs28233607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67573146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACGGAAC CACCTAGGAA
  CCAAAGACAA GCCCTCTCCA CTATTCCCCT TAACAGTGGC TACCACGTCC CCAGTCTGCT
  TTGCTCCCTG CCCAGTCTTC ATTGCCCGCT CAGCACTAGG CCATGTGGAG AAGCCAGAGT
  GCTTGAGAGG CTGAGAGCTG CAGCACAGAT TGCGTTATTC CATCACAGAT GCAGCTTAAA
  Y
  GCAGCTCTTC CTATGGCTCC ATGACACTTT GGGCCAATGG GGACAATCGT AGAACCTCTT
  TCTGAGTCCT AGTGGGGATA ATCAGATACT CTGCTTGTGG GGAGTTCCAC ACTGATATGG
  CAGGGCCACG CCCATGACCT TCATCTTCAC CCTAGAGACT GGCTCCTCCT TCATCAGAGT
  CTAGAGAGTC AGATGGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37171139	NES08487603	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28233607					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37171139	NES08487603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67573146 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	within coordinates
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102272	transcription start site region 102272	155 bp downstream
Tssr102273	transcription start site region 102273	205 bp upstream
Tssr102274	transcription start site region 102274	1186 bp upstream
Tssr102275	transcription start site region 102275	1568 bp upstream
Tssr102276	transcription start site region 102276	1878 bp upstream