rs28233608 SNP Detail

Summary

• ID
  rs28233608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67573096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGGCAG TGACCTAGTT
  ACCCACAGAA TAACAGCTTA ATCCTCTAAA GTCACGGAAC CACCTAGGAA CCAAAGACAA
  GCCCTCTCCA CTATTCCCCT TAACAGTGGC TACCACGTCC CCAGTCTGCT TTGCTCCCTG
  CCCAGTCTTC ATTGCCCGCT CAGCACTAGG CCATGTGGAG AAGCCAGAGT GCTTGAGAGG
  Y
  TGAGAGCTGC AGCACAGATT GCGTTATTCC ATCACAGATG CAGCTTAAAC GCAGCTCTTC
  CTATGGCTCC ATGACACTTT GGGCCAATGG GGACAATCGT AGAACCTCTT TCTGAGTCCT
  AGTGGGGATA ATCAGATACT CTGCTTGTGG GGAGTTCCAC ACTGATATGG CAGGGCCACG
  CCCATGACCT TCATCTTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37171140	NES08487600	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28233608					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37171140	NES08487600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67573096 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	within coordinates
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102272	transcription start site region 102272	105 bp downstream
Tssr102273	transcription start site region 102273	255 bp upstream
Tssr102274	transcription start site region 102274	1236 bp upstream
Tssr102275	transcription start site region 102275	1618 bp upstream
Tssr102276	transcription start site region 102276	1928 bp upstream