rs28234772 SNP Detail

Summary

• ID
  rs28234772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101678044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTATCTCTG GCTCAAGCTA TAGACCCAGC AAGAGAACCA
  ACTGCAGCTG CAGCTACAGC TGCCACACCT GCCCTGGCCT GGGACTGAAC ACTCAGATGA
  Y
  GATCAATGAT CAATGACATT TCTCCAAAGG GAGCATTGGG ACCTCTTCTC CAATGGAGTC
  CAAGGTTGTT AAGCAGAGGA AGGAAGAGAG AGGCTGGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss37281493	NES08554962	PERLEGEN	MM_PANEL2	f	SNP		T			T		C
ss38849906	mCV24798831	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss132730308	ENSMUSSNP4728173	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323833818	CHEV_11_101648532	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs28234772					SNP	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37281493	NES08554962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101678044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	1410 bp distal
Etv4	ets variant 4	1847 bp upstream
Gm39392	predicted gene, 39392	within coordinates
Gm71843	predicted gene, 71843	within coordinates
Rr386582	regulatory region 386582	within coordinates
Rr402993	regulatory region 402993	1644 bp downstream
Rr457078	regulatory region 457078	1357 bp distal
Rr457079	regulatory region 457079	285 bp distal
Tssr105162	transcription start site region 105162	510 bp upstream
Tssr105163	transcription start site region 105163	546 bp upstream
Tssr110972	transcription start site region 110972	1998 bp upstream
Tssr110973	transcription start site region 110973	1977 bp upstream
Tssr110974	transcription start site region 110974	1929 bp upstream