rs28236431 SNP Detail

Summary

• ID
  rs28236431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32128355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGATTG TAGATCATTC
  CAAATGTAGT CAAGGTGACA ACCAGAAATA GTCATCGCAA GCAGTGTGGG TATGGCCCAT
  TTGTCCCCCA GAACAACCAC TAGAATACAT ACATTTTAGG GCTTACCTTA TAGGACTATA
  GTAAGAAAGT TTTGGTCTGT CAGTTTCCAG CCTCACTTTT CCTTAGCCAG TTGAAAGGTG
  K
  CGGTTTGATG AATTTGTTCG TAAGGGGAAC TATGCTGTTG TTATTGAGAG GGTATGTATA
  TTAGCTAATA CAGGCATTCT CTTCTACTTT GTTTTTTTTT TAAATACTTT AAGTTTTTTT
  TTTTAGATTT ATTTATTATT ATATATAAGT ACACAGTAGC TGTCTTCAGA TGCACCAGAA
  GAGGTCATCA GATCTCATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37400274	NES08750704	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28236431					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400274	NES08750704	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32128355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11499	CpG island 11499			1307 bp distal
Gm13610	predicted gene 13610			1855 bp upstream
Pomt1	protein-O-mannosyltransferase 1			Intron
				Noncoding-Transcript-Variant
Rr554847	regulatory region 554847			1960 bp distal
Rr554848	regulatory region 554848			1743 bp distal
Rr554849	regulatory region 554849			918 bp distal
Tssr17254	transcription start site region 17254			1748 bp downstream
Tssr17255	transcription start site region 17255			1721 bp downstream
Tssr17256	transcription start site region 17256			1642 bp downstream
Tssr17257	transcription start site region 17257			1003 bp downstream
Tssr23466	transcription start site region 23466			1980 bp upstream
Tssr23467	transcription start site region 23467			1970 bp upstream
Tssr23468	transcription start site region 23468			1950 bp upstream