rs28236432 SNP Detail

Summary

• ID
  rs28236432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32127438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTATTA ACCCAACCCG
  CTATGCTGTA AATTCATCGT GACGCCAGGC GGCTTTAGGA CCCTGTGGCC TCGTTTGTGC
  CTTCCCGGGC TGCTGTCCGT TTACTTTAAT GGTAGTTCTT TCCCTCTTTT CCAGGGAGTC
  CTCCCGAGCT GGCTTTTCTG CAAAATGTTA AGATTTTTGA AACGGCCTCT AGTGGTGACT
  R
  TTGACATCAA TTTGAACTTG GTAGCTCTGA CTGGCCTGGG ACTACTTACC CGACTATGGC
  AACTCTCCTA CCCTCGGGCT GTGGTGTAAG TAGAGATCGG GGAGGAGAGT CAATGATCCA
  AGAGTCATTG TAATTAGTGA CAGGAATCAC CTTGCCGTAC AGTGCAAAAG AGAGACATTC
  TGGGTTTCTT GGATCTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37400275	NES08750719	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28236432					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400275	NES08750719	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32127438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11499	CpG island 11499			390 bp distal
Gm13610	predicted gene 13610			938 bp upstream
Pomt1	protein-O-mannosyltransferase 1			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr554847	regulatory region 554847			1043 bp distal
Rr554848	regulatory region 554848			826 bp distal
Rr554849	regulatory region 554849			1 bp distal
Tssr17254	transcription start site region 17254			831 bp downstream
Tssr17255	transcription start site region 17255			804 bp downstream
Tssr17256	transcription start site region 17256			725 bp downstream
Tssr17257	transcription start site region 17257			86 bp downstream
Tssr23466	transcription start site region 23466			1063 bp upstream
Tssr23467	transcription start site region 23467			1053 bp upstream
Tssr23468	transcription start site region 23468			1033 bp upstream