rs28236434 SNP Detail

Summary

• ID
  rs28236434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAGCGGCC TCGCCCCCAA
  CGGTCGATCC TGCCTGGCGG TTCGCAGGCC TGGCTCCACA TGGGGAGCCA CTCTACGGGA
  CTCGAAGAAA CGCTCGTAGG TTTTGGAGTG CCAGATTTGA GAGCCCTCCT GGGGTCTGGG
  ATCCGGCTTA GGGGCGGCGC GCTAGGGACG GTGGATGTTC GGATCCTGGC TGAGCAAGTC
  R
  TTTCCAGGGC GGCCTCTTGT AAAAGCCAGA GTGGGAAGAA CTGTAGAGAA AGAACGGGCT
  CGGGGCACAA GCAACTCTAG GAGGAGAGGA ATGCCTCCAG AAGAGGGAAA AGTCCATCCA
  GGTCACTGGG CTATGACAGT GCCCAGAGCT CCTCAGGGTC TTAGTTTTCA ACCACATTGG
  GAAGGGACAG GAGAGGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37400277	NES08750717	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28236434					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400277	NES08750717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126859 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11499	CpG island 11499			within coordinates
Gm13610	predicted gene 13610			359 bp upstream
Pomt1	protein-O-mannosyltransferase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr554847	regulatory region 554847			464 bp distal
Rr554848	regulatory region 554848			247 bp distal
Rr554849	regulatory region 554849			557 bp proximal
Tssr17254	transcription start site region 17254			252 bp downstream
Tssr17255	transcription start site region 17255			225 bp downstream
Tssr17256	transcription start site region 17256			146 bp downstream
Tssr17257	transcription start site region 17257			450 bp upstream
Tssr23466	transcription start site region 23466			484 bp upstream
Tssr23467	transcription start site region 23467			474 bp upstream
Tssr23468	transcription start site region 23468			454 bp upstream