rs28236435 SNP Detail

Summary

• ID
  rs28236435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGAGCCC TAAGGATAGG ACAGTCAGTA TGCCCAACTT
  TGATGGCCGG TGAGCACGCC GCGCATGCGC GCCACTACCT CGCGCTCCGG CTGCGCACGC
  R
  CGTCTCAGAG TCTGTCGGCC GCGTAGACAC AACTAGTTGA GCGTCGATCC GTGGCCGCTG
  CAGAGTAATC GAGCGGCCTC GCCCCCAACG GTCGATCCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37400278	NES08750716	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs28236435					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400278	NES08750716	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11499	CpG island 11499	within coordinates
Gm13610	predicted gene 13610	90 bp upstream
Pomt1	protein-O-mannosyltransferase 1	Intron
Rr554847	regulatory region 554847	195 bp distal
Rr554848	regulatory region 554848	within coordinates
Rr554849	regulatory region 554849	826 bp proximal
Tssr17254	transcription start site region 17254	1 bp upstream
Tssr17255	transcription start site region 17255	23 bp upstream
Tssr17256	transcription start site region 17256	53 bp upstream
Tssr17257	transcription start site region 17257	719 bp upstream
Tssr23466	transcription start site region 23466	215 bp upstream
Tssr23467	transcription start site region 23467	205 bp upstream
Tssr23468	transcription start site region 23468	185 bp upstream