rs28236436 SNP Detail

Summary

• ID
  rs28236436
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAAGGC AGTAGTTCAA
  AGCCATCATC CTCTACATAG CGAGCCTGAG ACCTTGGGGA GGAGGAGGGA CAGACAGCTT
  GTAGGCATTC CAGTGTGGGA AGAGTTGAGA AAAAGCGATC CACCACTCAC ACAGCTCCAG
  GAGGTACAAC GCACCCGAGG CTTCAAAGCT CTTACTCCTG CCCGTAAGCT AACGCGCTGC
  K
  TAACGAAACC GCTAAAGTAG ACGCGAGGCC CGAAACGGAG AGCTCCGAGC ACGTGAACAG
  CTTGTGGAAA CACACTGTGC TTTATTAAAA AGGGGAAAGG GAGCCCTAAG GATAGGACAG
  TCAGTATGCC CAACTTTGAT GGCCGGTGAG CACGCCGCGC ATGCGCGCCA CTACCTCGCG
  CTCCGGCTGC GCACGCGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37400279	NES08750715	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28236436					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400279	NES08750715	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11499	CpG island 11499	within coordinates
Gm13610	predicted gene 13610	within coordinates
Pomt1	protein-O-mannosyltransferase 1	Intron
Prrc2b	proline-rich coiled-coil 2B	1844 bp downstream
Rr554847	regulatory region 554847	within coordinates
Rr554848	regulatory region 554848	3 bp proximal
Rr554849	regulatory region 554849	1023 bp proximal
Tssr17254	transcription start site region 17254	198 bp upstream
Tssr17255	transcription start site region 17255	220 bp upstream
Tssr17256	transcription start site region 17256	250 bp upstream
Tssr17257	transcription start site region 17257	916 bp upstream
Tssr23466	transcription start site region 23466	18 bp upstream
Tssr23467	transcription start site region 23467	8 bp upstream
Tssr23468	transcription start site region 23468	within coordinates