rs28236437 SNP Detail

Summary

• ID
  rs28236437
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCTGGG GAAGCAAAGG
  CAGTAGTTCA AAGCCATCAT CCTCTACATA GCGAGCCTGA GACCTTGGGG AGGAGGAGGG
  ACAGACAGCT TGTAGGCATT CCAGTGTGGG AAGAGTTGAG AAAAAGCGAT CCACCACTCA
  CACAGCTCCA GGAGGTACAA CGCACCCGAG GCTTCAAAGC TCTTACTCCT GCCCGTAAGC
  Y
  AACGCGCTGC TTAACGAAAC CGCTAAAGTA GACGCGAGGC CCGAAACGGA GAGCTCCGAG
  CACGTGAACA GCTTGTGGAA ACACACTGTG CTTTATTAAA AAGGGGAAAG GGAGCCCTAA
  GGATAGGACA GTCAGTATGC CCAACTTTGA TGGCCGGTGA GCACGCCGCG CATGCGCGCC
  ACTACCTCGC GCTCCGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37400280	NES08750714	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28236437					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400280	NES08750714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126382 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11499	CpG island 11499			within coordinates
Gm13610	predicted gene 13610			within coordinates
Pomt1	protein-O-mannosyltransferase 1			Intron
				Splice-Site
Prrc2b	proline-rich coiled-coil 2B			1833 bp downstream
Rr554847	regulatory region 554847			within coordinates
Rr554848	regulatory region 554848			14 bp proximal
Rr554849	regulatory region 554849			1034 bp proximal
Tssr17254	transcription start site region 17254			209 bp upstream
Tssr17255	transcription start site region 17255			231 bp upstream
Tssr17256	transcription start site region 17256			261 bp upstream
Tssr17257	transcription start site region 17257			927 bp upstream
Tssr23466	transcription start site region 23466			7 bp upstream
Tssr23467	transcription start site region 23467			within coordinates
Tssr23468	transcription start site region 23468			7 bp downstream