rs28236438 SNP Detail

Summary

• ID
  rs28236438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGCGTG ATTGTAATAC
  CCACCCACCT AAAAAGGCAT GATTGTAATA CCTGCGCTGG GGAAGCAAAG GCAGTAGTTC
  AAAGCCATCA TCCTCTACAT AGCGAGCCTG AGACCTTGGG GAGGAGGAGG GACAGACAGC
  TTGTAGGCAT TCCAGTGTGG GAAGAGTTGA GAAAAAGCGA TCCACCACTC ACACAGCTCC
  R
  GGAGGTACAA CGCACCCGAG GCTTCAAAGC TCTTACTCCT GCCCGTAAGC TAACGCGCTG
  CTTAACGAAA CCGCTAAAGT AGACGCGAGG CCCGAAACGG AGAGCTCCGA GCACGTGAAC
  AGCTTGTGGA AACACACTGT GCTTTATTAA AAAGGGGAAA GGGAGCCCTA AGGATAGGAC
  AGTCAGTATG CCCAACTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37400281	NES08750713	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28236438					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400281	NES08750713	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11499	CpG island 11499	within coordinates
Gm13610	predicted gene 13610	within coordinates
Pomt1	protein-O-mannosyltransferase 1	mRNA-UTR
Prrc2b	proline-rich coiled-coil 2B	1782 bp downstream
Rr554847	regulatory region 554847	within coordinates
Rr554848	regulatory region 554848	65 bp proximal
Rr554849	regulatory region 554849	1085 bp proximal
Tssr17254	transcription start site region 17254	260 bp upstream
Tssr17255	transcription start site region 17255	282 bp upstream
Tssr17256	transcription start site region 17256	312 bp upstream
Tssr17257	transcription start site region 17257	978 bp upstream
Tssr23466	transcription start site region 23466	32 bp downstream
Tssr23467	transcription start site region 23467	46 bp downstream
Tssr23468	transcription start site region 23468	58 bp downstream