rs28236439 SNP Detail

Summary

• ID
  rs28236439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32125681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCCAGC AAGCAACACA
  ATTTCCTCCT GAAGCTGAGT GCCCACGAGC TGTCCTGAAG CACCAGCATG ACTTACATGA
  TCAGACTAAA CTTGGAACCC AAAGAGCTCG CTCTCCAATC TTCTGGCGCC CTTTCTTTGC
  AGGAACTTGG GTAGACTATG CTTAAACGAT GAACAAACAA TTCCGTGCAC TCTTGACTAA
  Y
  GTATTTTATA TGTATCTGTG GTAACTTGAC TGCCTGGTGC CAGATTCTCT GGAATTGCGG
  TTCCAGATGA TTCTGAGCTG TCATGTGGAT GCTGGAAATG GAATCAAGGA CCTCTTTTTT
  TGTTTTTGTT TGTTTTGTTT TCGAGACAGG GTTTCTCTGT ATATCTGTAG ACCAGGCTGG
  CCTCGAACTC AGAAATCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37400282	NES08750813	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28236439					SNP	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400282	NES08750813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32125681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11499	CpG island 11499	514 bp proximal
Gm13610	predicted gene 13610	within coordinates
Pomt1	protein-O-mannosyltransferase 1	921 bp upstream
Prrc2b	proline-rich coiled-coil 2B	1132 bp downstream
Rr554847	regulatory region 554847	192 bp proximal
Rr554848	regulatory region 554848	715 bp proximal
Rr554849	regulatory region 554849	1735 bp proximal
Tssr17254	transcription start site region 17254	910 bp upstream
Tssr17255	transcription start site region 17255	932 bp upstream
Tssr17256	transcription start site region 17256	962 bp upstream
Tssr17257	transcription start site region 17257	1628 bp upstream
Tssr23466	transcription start site region 23466	682 bp downstream
Tssr23467	transcription start site region 23467	696 bp downstream
Tssr23468	transcription start site region 23468	708 bp downstream