rs28236440 SNP Detail

Summary

• ID
  rs28236440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32125648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTAGCT TTTAAAGCCA
  CATACATACC TCAGGTTTCC AGCAAGCAAC ACAATTTCCT CCTGAAGCTG AGTGCCCACG
  AGCTGTCCTG AAGCACCAGC ATGACTTACA TGATCAGACT AAACTTGGAA CCCAAAGAGC
  TCGCTCTCCA ATCTTCTGGC GCCCTTTCTT TGCAGGAACT TGGGTAGACT ATGCTTAAAC
  R
  ATGAACAAAC AATTCCGTGC ACTCTTGACT AATGTATTTT ATATGTATCT GTGGTAACTT
  GACTGCCTGG TGCCAGATTC TCTGGAATTG CGGTTCCAGA TGATTCTGAG CTGTCATGTG
  GATGCTGGAA ATGGAATCAA GGACCTCTTT TTTTGTTTTT GTTTGTTTTG TTTTCGAGAC
  AGGGTTTCTC TGTATATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400283	NES08750812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236440					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400283	NES08750812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32125648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11499	CpG island 11499	547 bp proximal
Gm13610	predicted gene 13610	within coordinates
Pomt1	protein-O-mannosyltransferase 1	954 bp upstream
Prrc2b	proline-rich coiled-coil 2B	1099 bp downstream
Rr554847	regulatory region 554847	225 bp proximal
Rr554848	regulatory region 554848	748 bp proximal
Rr554849	regulatory region 554849	1768 bp proximal
Tssr17254	transcription start site region 17254	943 bp upstream
Tssr17255	transcription start site region 17255	965 bp upstream
Tssr17256	transcription start site region 17256	995 bp upstream
Tssr17257	transcription start site region 17257	1661 bp upstream
Tssr23466	transcription start site region 23466	715 bp downstream
Tssr23467	transcription start site region 23467	729 bp downstream
Tssr23468	transcription start site region 23468	741 bp downstream