rs28236441 SNP Detail

Summary

• ID
  rs28236441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32125607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCTTGC TACAGAACAG
  GCAAGGGTCT GGGTAGTAGC ATCCACTAGC TTTTAAAGCC ACATACATAC CTCAGGTTTC
  CAGCAAGCAA CACAATTTCC TCCTGAAGCT GAGTGCCCAC GAGCTGTCCT GAAGCACCAG
  CATGACTTAC ATGATCAGAC TAAACTTGGA ACCCAAAGAG CTCGCTCTCC AATCTTCTGG
  Y
  GCCCTTTCTT TGCAGGAACT TGGGTAGACT ATGCTTAAAC GATGAACAAA CAATTCCGTG
  CACTCTTGAC TAATGTATTT TATATGTATC TGTGGTAACT TGACTGCCTG GTGCCAGATT
  CTCTGGAATT GCGGTTCCAG ATGATTCTGA GCTGTCATGT GGATGCTGGA AATGGAATCA
  AGGACCTCTT TTTTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400284	NES08750811	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28236441					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400284	NES08750811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32125607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11499	CpG island 11499	588 bp proximal
Gm13610	predicted gene 13610	within coordinates
Pomt1	protein-O-mannosyltransferase 1	995 bp upstream
Prrc2b	proline-rich coiled-coil 2B	1058 bp downstream
Rr554847	regulatory region 554847	266 bp proximal
Rr554848	regulatory region 554848	789 bp proximal
Rr554849	regulatory region 554849	1809 bp proximal
Tssr17254	transcription start site region 17254	984 bp upstream
Tssr17255	transcription start site region 17255	1006 bp upstream
Tssr17256	transcription start site region 17256	1036 bp upstream
Tssr17257	transcription start site region 17257	1702 bp upstream
Tssr23466	transcription start site region 23466	756 bp downstream
Tssr23467	transcription start site region 23467	770 bp downstream
Tssr23468	transcription start site region 23468	782 bp downstream