rs28240232 SNP Detail

Summary

• ID
  rs28240232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164908883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAT AACAATAGAG ACCAGGCCAC
  Y
  TTTGAATGAG TGAAGACAGA GAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515551	NES08877652	PERLEGEN	MM_PANEL2	f	SNP	T			C	C		C	C	C	C		T	C	C		C
ss45247777	mCV23187167	ABI	CRAMUS_MOUSE	f	SNP		T	C			T		C
ss148234669	ENSMUSSNP2927263	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320607402	CHEV_2_164892463	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28240232					SNP	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515551	NES08877652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164908883 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21711	transcription start site region 21711	1961 bp downstream
Tssr21712	transcription start site region 21712	1938 bp downstream
Tssr21713	transcription start site region 21713	1244 bp downstream
Tssr21714	transcription start site region 21714	279 bp downstream
Tssr21715	transcription start site region 21715	245 bp downstream
Tssr21716	transcription start site region 21716	195 bp downstream
Tssr21717	transcription start site region 21717	102 bp downstream
Tssr21718	transcription start site region 21718	55 bp downstream
Tssr21719	transcription start site region 21719	20 bp upstream
Tssr21720	transcription start site region 21720	223 bp upstream
Tssr21721	transcription start site region 21721	266 bp upstream
Tssr21722	transcription start site region 21722	1136 bp upstream
Tssr27603	transcription start site region 27603	1579 bp upstream