rs28240233 SNP Detail

Summary

• ID
  rs28240233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164908279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGGCGG GGAGGCTGTT
  TCTGGCATTT GGTTAGTGGA GGCAAAGGTG CTGCTAAATA GTCTGTGAAA CAAAGGCCAT
  TTCCCAGCAC AAAATACCTG CAGATTGGCC ATTTCCATTT CAATATGACC GTAACCTTTC
  CTTTCTGTGG TTTCTGTTCT TCACTTAATG ATCATCTTGG GATGCTGCAC TCTAAGTCAC
  R
  TGCTCAGTGA ACAAGGACTT GCTGCTTGCT GGGGGACTCC CCTGGGCTTG GAAGTCTTAT
  GGCGGGGAGC CCTGTTTCTG TCTGTCTGTC TGCATGTGTG TGTGTACATG CACATACATG
  TGTACACATG TGTCTTTGTG CAGCTGTGAG GATAAGAACT TGGAGGTCCT ACAGAAAGGA
  ACGAGTCAGA CTAATGTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515552	NES08877651	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		G	G	G	G	G	G	G	G
ss45214080	mCV23187165	ABI	CRAMUS_MOUSE	f	SNP		A	G			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28240233					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515552	NES08877651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164908279 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21710	transcription start site region 21710	1420 bp downstream
Tssr21711	transcription start site region 21711	1357 bp downstream
Tssr21712	transcription start site region 21712	1334 bp downstream
Tssr21713	transcription start site region 21713	640 bp downstream
Tssr21714	transcription start site region 21714	300 bp upstream
Tssr21715	transcription start site region 21715	346 bp upstream
Tssr21716	transcription start site region 21716	400 bp upstream
Tssr21717	transcription start site region 21717	487 bp upstream
Tssr21718	transcription start site region 21718	533 bp upstream
Tssr21719	transcription start site region 21719	624 bp upstream
Tssr21720	transcription start site region 21720	827 bp upstream
Tssr21721	transcription start site region 21721	870 bp upstream
Tssr21722	transcription start site region 21722	1740 bp upstream
Tssr27603	transcription start site region 27603	975 bp upstream