rs28240234 SNP Detail

Summary

• ID
  rs28240234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCCCTC CTCCCAGGAC
  CTTCCATCCA CACCACACAT CTCCACTCCT GTCCTGCCTC TGGCTGCCCA CTCTGCTGCA
  ACGGTCCTCT CACCAGTCAG GTCACTCCCT AGCTGCCTGC CTGCAGCTGC CCTGCCTGCA
  GCTGCTCATC ACCGCACTTG TCACCATGTG ACTCCCCTCC TGTCACACTG TTCCTACTTA
  R
  CTGGGTCCCA CTTTCCCATC CTTCAATGCC TTCTGATGCC CCCCTTCATG GGGAAGTCTT
  CCCAGAAGAC CCTGAAAGCA GAGCTTCTTA ACGGGGACCA GTTTGGCTCT CTGTGGGGGC
  GTTGGCCACA TCTGATCATC TTTTGGATGC TGTACTTGGC GGGGAGGCTG TTTCTGGCAT
  TTGGTTAGTG GAGGCAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515553	NES08877698	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28240234					SNP	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515553	NES08877698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907926 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21708	transcription start site region 21708	1843 bp downstream
Tssr21709	transcription start site region 21709	1801 bp downstream
Tssr21710	transcription start site region 21710	1067 bp downstream
Tssr21711	transcription start site region 21711	1004 bp downstream
Tssr21712	transcription start site region 21712	981 bp downstream
Tssr21713	transcription start site region 21713	287 bp downstream
Tssr21714	transcription start site region 21714	653 bp upstream
Tssr21715	transcription start site region 21715	699 bp upstream
Tssr21716	transcription start site region 21716	753 bp upstream
Tssr21717	transcription start site region 21717	840 bp upstream
Tssr21718	transcription start site region 21718	886 bp upstream
Tssr21719	transcription start site region 21719	977 bp upstream
Tssr21720	transcription start site region 21720	1180 bp upstream
Tssr21721	transcription start site region 21721	1223 bp upstream
Tssr27603	transcription start site region 27603	622 bp upstream