rs28240235 SNP Detail

Summary

• ID
  rs28240235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCCCCT TTGGAGACCC
  TTCGGATCTT CTCTGGGGAC CCCCAAATCT GCCTCAGTTT GTGTGAGACC CTCAGGGATG
  CCCCTAATCT CGGGAGGCTT CAGCCAACTT GTAAAGGTGC TGAGGGCCTT TCTCACACAA
  GGCTAGAGCA CGCACGCATT TTCTCTGAAG CCTCTCTTCC ACCACATCCC GGTTTTCCTT
  Y
  GCCATGTCCC TTGCCATGTC CCCTCTGTCC CCTCCTCCCA GGACCTTCCA TCCACACCAC
  ACATCTCCAC TCCTGTCCTG CCTCTGGCTG CCCACTCTGC TGCAACGGTC CTCTCACCAG
  TCAGGTCACT CCCTAGCTGC CTGCCTGCAG CTGCCCTGCC TGCAGCTGCT CATCACCGCA
  CTTGTCACCA TGTGACTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515554	NES08877697	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28240235					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515554	NES08877697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907701 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21708	transcription start site region 21708	1618 bp downstream
Tssr21709	transcription start site region 21709	1576 bp downstream
Tssr21710	transcription start site region 21710	842 bp downstream
Tssr21711	transcription start site region 21711	779 bp downstream
Tssr21712	transcription start site region 21712	756 bp downstream
Tssr21713	transcription start site region 21713	62 bp downstream
Tssr21714	transcription start site region 21714	878 bp upstream
Tssr21715	transcription start site region 21715	924 bp upstream
Tssr21716	transcription start site region 21716	978 bp upstream
Tssr21717	transcription start site region 21717	1065 bp upstream
Tssr21718	transcription start site region 21718	1111 bp upstream
Tssr21719	transcription start site region 21719	1202 bp upstream
Tssr21720	transcription start site region 21720	1405 bp upstream
Tssr21721	transcription start site region 21721	1448 bp upstream
Tssr27603	transcription start site region 27603	397 bp upstream