rs28240237 SNP Detail

Summary

• ID
  rs28240237
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACCACAGT GGTTTCTCTT
  GTGGTTATAG TGCTTGCTTG CAGGTCACAC TCACCGTCCT CACTGGTGGG TTTAGTTGTT
  CATAGAAGTT CCCGTCCCGG AGTCAAATGT GCAACTGCCG CACTGCCCCA CTTAGCTGGT
  K
  CATGCTGCTG TTTCAACTTT TATCCCCTTT GGAGACCCTT CGGATCTTCT CTGGGGACCC
  CCAAATCTGC CTCAGTTTGT GTGAGACCCT CAGGGATGCC CCTAATCTCG GGAGGCTTCA
  GCCAACTTGT AAAGGTGCTG AGGGCCTTTC TCACACAAGG CTAGAGCACG CACGCATTTT
  CTCTGAAGCC TCTCTTCCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515556	NES08877695	PERLEGEN	MM_PANEL2	f	SNP	G			T	T	T	T	G	T	T	G	T
ss45203620	mCV23187157	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss148234644	ENSMUSSNP2030320	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28240237					SNP	G	G	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515556	NES08877695	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907482 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21707	transcription start site region 21707	1993 bp downstream
Tssr21708	transcription start site region 21708	1399 bp downstream
Tssr21709	transcription start site region 21709	1357 bp downstream
Tssr21710	transcription start site region 21710	623 bp downstream
Tssr21711	transcription start site region 21711	560 bp downstream
Tssr21712	transcription start site region 21712	537 bp downstream
Tssr21713	transcription start site region 21713	139 bp upstream
Tssr21714	transcription start site region 21714	1097 bp upstream
Tssr21715	transcription start site region 21715	1143 bp upstream
Tssr21716	transcription start site region 21716	1197 bp upstream
Tssr21717	transcription start site region 21717	1284 bp upstream
Tssr21718	transcription start site region 21718	1330 bp upstream
Tssr21719	transcription start site region 21719	1421 bp upstream
Tssr21720	transcription start site region 21720	1624 bp upstream
Tssr21721	transcription start site region 21721	1667 bp upstream
Tssr27603	transcription start site region 27603	178 bp upstream