rs28240238 SNP Detail

Summary

• ID
  rs28240238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA CACTCACCGT CCTCACTGGT
  R
  GGTTTAGTTG TTCATAGAAG TTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515557	NES08877694	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	A	G		G	A	G		A
ss148234639	ENSMUSSNP6307369	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				A
ss320607398	CHEV_2_164890989	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28240238					SNP	G	G	A	A	G	A	A	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515557	NES08877694	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907409 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21707	transcription start site region 21707	1920 bp downstream
Tssr21708	transcription start site region 21708	1326 bp downstream
Tssr21709	transcription start site region 21709	1284 bp downstream
Tssr21710	transcription start site region 21710	550 bp downstream
Tssr21711	transcription start site region 21711	487 bp downstream
Tssr21712	transcription start site region 21712	464 bp downstream
Tssr21713	transcription start site region 21713	212 bp upstream
Tssr21714	transcription start site region 21714	1170 bp upstream
Tssr21715	transcription start site region 21715	1216 bp upstream
Tssr21716	transcription start site region 21716	1270 bp upstream
Tssr21717	transcription start site region 21717	1357 bp upstream
Tssr21718	transcription start site region 21718	1403 bp upstream
Tssr21719	transcription start site region 21719	1494 bp upstream
Tssr21720	transcription start site region 21720	1697 bp upstream
Tssr21721	transcription start site region 21721	1740 bp upstream
Tssr27603	transcription start site region 27603	105 bp upstream