rs28240239 SNP Detail

Summary

• ID
  rs28240239
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATGCACA CACACACATA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACACA CACACACCAC AGTGGTTTCT CTTGTGGTTA
  W
  AGTGCTTGCT TGCAGGTCAC ACTCACCGTC CTCACTGGTG GGTTTAGTTG TTCATAGAAG
  TTCCCGTCCC GGAGTCAAAT GTGCAACTGC CGCACTGCCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss37515558	NES08877693	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs28240239					SNP	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515558	NES08877693	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907369 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21707	transcription start site region 21707	1880 bp downstream
Tssr21708	transcription start site region 21708	1286 bp downstream
Tssr21709	transcription start site region 21709	1244 bp downstream
Tssr21710	transcription start site region 21710	510 bp downstream
Tssr21711	transcription start site region 21711	447 bp downstream
Tssr21712	transcription start site region 21712	424 bp downstream
Tssr21713	transcription start site region 21713	252 bp upstream
Tssr21714	transcription start site region 21714	1210 bp upstream
Tssr21715	transcription start site region 21715	1256 bp upstream
Tssr21716	transcription start site region 21716	1310 bp upstream
Tssr21717	transcription start site region 21717	1397 bp upstream
Tssr21718	transcription start site region 21718	1443 bp upstream
Tssr21719	transcription start site region 21719	1534 bp upstream
Tssr21720	transcription start site region 21720	1737 bp upstream
Tssr21721	transcription start site region 21721	1780 bp upstream
Tssr27603	transcription start site region 27603	65 bp upstream