rs28240250 SNP Detail

Summary

• ID
  rs28240250
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164904224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTCTTGCT TTGGTAGATG
  GCAGTAAGAC GATGTGACAA CAGAGTAAAA AAAAAAATAG ACCTCACACT CTGGGGGCTC
  ACTTTTCTGC TTTGGATTTC CACATCAGCT ACAGCCTGCG TCTTGGCTAA CTTTCAACAT
  GCCGGTGGAA GATCCCTTCC AGCTGTCCAC TTCTGTTTTT AGGTCCATCT AGGGCAGTGT
  S
  TTACGTGCAG TGACAAACAG TACCTCCACG ATGGCCAGTG CTGTGATTTG TGCCAGCCAG
  GTGAGATGCT AGCCCTCCTG CCCCGTACCA AGACCCTTTC CCTCTTGGAT TGCTGGTGGA
  TGCAGACCCC ATATATAGAC TGTGAACTCA AGTCTAAAAT GACCCATTTC TCCCTCTTCC
  TTGATGCCAG AATACCCCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515570	NES08877802	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28240250					SNP	G	G	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515570	NES08877802	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164904224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd40	CD40 antigen			Coding-NonSynonymous
				mRNA-UTR
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr569805	regulatory region 569805			within coordinates
Tssr21706	transcription start site region 21706			7 bp upstream
Tssr21707	transcription start site region 21707			1253 bp upstream
Tssr21708	transcription start site region 21708			1832 bp upstream
Tssr21709	transcription start site region 21709			1890 bp upstream