rs28240253 SNP Detail

Summary

• ID
  rs28240253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164903613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT CTCAGCAAAG AAAGCTACGC
  R
  TCGAGGCTTA ATAACCCTGT TATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37515573	NES08877826	PERLEGEN	MM_PANEL2	f	SNP	A			G	G		G	G		A	G	G		G
ss45313725	mCV23187129	ABI	CRAMUS_MOUSE	f	SNP	A	A	G			A	G
ss148234572	ENSMUSSNP6743863	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
ss320607386	CHEV_2_164887193	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28240253					SNP	A	A	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515573	NES08877826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164903613 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd40	CD40 antigen			Intron
				Noncoding-Transcript-Variant
Rr569804	regulatory region 569804			1413 bp distal
Rr569805	regulatory region 569805			17 bp proximal
Tssr21705	transcription start site region 21705			1762 bp downstream
Tssr21706	transcription start site region 21706			618 bp upstream
Tssr21707	transcription start site region 21707			1864 bp upstream