GGTGT TGCATCTCTG AAAGGAAAAG Y GGAGTATCAC AAAGTCCCAC TGCTG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
AKR/J |
C3H/HeJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37515574 | NES08877864 | PERLEGEN | MM_PANEL2 | f | SNP | C | T | T | T | T | C | T | T | ||
ss320607383 | CHEV_2_164886230 | CHEVERUD | SCREENING_POP | f | SNP | T | T | ||||||||
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
AKR/J |
C3H/HeJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs28240254 | SNP | C | T | T | T | T | T | C | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37515574 | NES08877864 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr2:164902650 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cd40 | CD40 antigen | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr569804 | regulatory region 569804 | 450 bp distal | ||||||
Rr569805 | regulatory region 569805 | 980 bp proximal | ||||||
Tssr21704 | transcription start site region 21704 | 1426 bp downstream | ||||||
Tssr21705 | transcription start site region 21705 | 799 bp downstream | ||||||
Tssr21706 | transcription start site region 21706 | 1581 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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