rs28240256 SNP Detail

Summary

• ID
  rs28240256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164901791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCATTTC CTGGAACCCA
  TGTAAGGTAG TGTGTGGTGG CAGAAGTCCA AGTCTGACAT CCTAAGGCTC CTACTGTGAG
  ACAGGAGGTG GGAACAGGAG AACCCCGGAA ACTTTCAGCA CATGCAACCA AGAACAACAA
  AATGATGGTG GCTTAAGCAC AGTAGGAGAT AGCACTGAGA GCAGTGTTGG CCACTGACCT
  Y
  CGTACACTTC CAGTTATGGC AAGAGCACGC TCCAAGCTGC AGACAGGGCA GTGGGCGTTG
  CGTGTGCACA CACACCAAAA CACGGGCCCA CTTTATGGTT CTTAAAAAAA GTTTCTACAC
  TTAAAAAAAT GTAGTTTTCG TTATACTTAT TTATTTATAT ATTATTTGTA TGCATGCATG
  CATGCATGCG TGCTTGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37515576	NES08877885	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28240256					SNP	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37515576	NES08877885	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164901791 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd40	CD40 antigen			Intron
				Noncoding-Transcript-Variant
Rr569804	regulatory region 569804			205 bp proximal
Rr569805	regulatory region 569805			1839 bp proximal
Tssr21703	transcription start site region 21703			1601 bp downstream
Tssr21704	transcription start site region 21704			567 bp downstream
Tssr21705	transcription start site region 21705			51 bp upstream