rs28244279 SNP Detail

Summary

• ID
  rs28244279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83009732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTCTG TCTGTCTCTC
  TCTGTCTCTG TCTCTCTGTC TTTGTCTCTG TCTCGCTGTC TCTCTGCCTC CCCACCCCCA
  CCCTGCTTTC TTTTCACCAA GTCTACTGAA CTGTAAAGTT ACGCACAAGT GCAAGTGATT
  GTCTTGGGCT AGCTTCACTG GCGTTCCCCT GCCCAAATCA GGTCTTCTGC CTCAGCCTCG
  M
  TTCTGGAATG TCTTGTGATC AGGTTCAAAT GCTTTCTCCC TGGGTCCTCT TTGAATGAAG
  ATCTCTCAAG AAGGCAGCTT TGTCCTTGCT CTGCTCTGAG TTTCTAGGTA GCCCTGAGGA
  ATGCTGGGTC TATTGCTGTC TGTTCCTGGG TTGCAGTCAT GGTGTCCTCT CCTTATGGCA
  CTAGACAGAA GCCTGTAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142345	NES08464866	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	A		C	C	C		C
ss323766857	CHEV_11_82932408	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244279					SNP	C	C	A	C	C	C	C	C	C	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142345	NES08464866	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83009732 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	340 bp upstream
Rr247350	regulatory region 247350	1131 bp distal
Slfn1	schlafen 1	within coordinates
Tssr103656	transcription start site region 103656	1988 bp downstream
Tssr103657	transcription start site region 103657	1938 bp downstream
Tssr103658	transcription start site region 103658	1907 bp downstream
Tssr103659	transcription start site region 103659	1885 bp downstream
Tssr103660	transcription start site region 103660	548 bp downstream