rs28244282 SNP Detail

Summary

• ID
  rs28244282
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83009633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATAGAT CACTCTGTCT
  CTCTTTTGTC TCTCTATGTG TTTTGTGTCT CTGTCTTCCT GTGTCTCTTT GTCTCTGTCC
  TTCTCTGTCT CTGTCTCTCT CTTTCTCTGT CTGTCTCTCT CTGTCTCTGT CTCTCTGTCT
  TTGTCTCTGT CTCGCTGTCT CTCTGCCTCC CCACCCCCAC CCTGCTTTCT TTTCACCAAG
  W
  CTACTGAACT GTAAAGTTAC GCACAAGTGC AAGTGATTGT CTTGGGCTAG CTTCACTGGC
  GTTCCCCTGC CCAAATCAGG TCTTCTGCCT CAGCCTCGCT TCTGGAATGT CTTGTGATCA
  GGTTCAAATG CTTTCTCCCT GGGTCCTCTT TGAATGAAGA TCTCTCAAGA AGGCAGCTTT
  GTCCTTGCTC TGCTCTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142348	NES08464863	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	T	A		A	T	T	T		T
ss323766856	CHEV_11_82932309	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244282					SNP	T	T	A	T	T	T	T	T	T	A	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142348	NES08464863	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83009633 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	241 bp upstream
Rr247350	regulatory region 247350	1032 bp distal
Slfn1	schlafen 1	within coordinates
Tssr103654	transcription start site region 103654	1957 bp downstream
Tssr103655	transcription start site region 103655	1925 bp downstream
Tssr103656	transcription start site region 103656	1889 bp downstream
Tssr103657	transcription start site region 103657	1839 bp downstream
Tssr103658	transcription start site region 103658	1808 bp downstream
Tssr103659	transcription start site region 103659	1786 bp downstream
Tssr103660	transcription start site region 103660	449 bp downstream