rs28244283 SNP Detail

Summary

• ID
  rs28244283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83009334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCTCCT CCCTACTTAT
  ACCCCCTACC TCCATACCTA CCCAGCAAGG AGACTGTAGC AGAAAGATCT TGCCCAGAAT
  ATCTTCCAGG TTGTTTTCCA ACTCAACTCT GCAAGAGCTG AGATGACAGG TTTGCACCAC
  CTCCTTGGCT CCCTGCTTCC TTTTGCAGTG ATGGTGAACA TGTCTCCAGG CAATCCATCA
  R
  CAAAAATGGT CTCAACTCTG GAGCAGCCCT CCCATGGAAG AAGGAGGAGC CAAGCAACAC
  TAACTAGCTA TAATAAGGAA AAGAAATATA GGCAAGACAT AAATAGATCA CTCTGTCTCT
  CTTTTGTCTC TCTATGTGTT TTGTGTCTCT GTCTTCCTGT GTCTCTTTGT CTCTGTCCTT
  CTCTGTCTCT GTCTCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37142349	NES08464931	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28244283					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142349	NES08464931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83009334 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
Rr247350	regulatory region 247350	733 bp distal
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	1819 bp downstream
Tssr103653	transcription start site region 103653	1711 bp downstream
Tssr103654	transcription start site region 103654	1658 bp downstream
Tssr103655	transcription start site region 103655	1626 bp downstream
Tssr103656	transcription start site region 103656	1590 bp downstream
Tssr103657	transcription start site region 103657	1540 bp downstream
Tssr103658	transcription start site region 103658	1509 bp downstream
Tssr103659	transcription start site region 103659	1487 bp downstream
Tssr103660	transcription start site region 103660	150 bp downstream
Tssr109644	transcription start site region 109644	1916 bp upstream