rs28244284 SNP Detail

Summary

• ID
  rs28244284
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83009300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAGAGTT TCAGTTTTGT
  TTTTGTCTGG CTTTCATGTC TCCTCCCTAC TTATACCCCC TACCTCCATA CCTACCCAGC
  AAGGAGACTG TAGCAGAAAG ATCTTGCCCA GAATATCTTC CAGGTTGTTT TCCAACTCAA
  CTCTGCAAGA GCTGAGATGA CAGGTTTGCA CCACCTCCTT GGCTCCCTGC TTCCTTTTGC
  R
  GTGATGGTGA ACATGTCTCC AGGCAATCCA TCAGCAAAAA TGGTCTCAAC TCTGGAGCAG
  CCCTCCCATG GAAGAAGGAG GAGCCAAGCA ACACTAACTA GCTATAATAA GGAAAAGAAA
  TATAGGCAAG ACATAAATAG ATCACTCTGT CTCTCTTTTG TCTCTCTATG TGTTTTGTGT
  CTCTGTCTTC CTGTGTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142350	NES08464929	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	G		G	A	A	A		A
ss323766853	CHEV_11_82931976	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244284					SNP	A	A	G	A	A	A	A	A	A	G	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142350	NES08464929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83009300 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
Rr247350	regulatory region 247350	699 bp distal
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	1785 bp downstream
Tssr103653	transcription start site region 103653	1677 bp downstream
Tssr103654	transcription start site region 103654	1624 bp downstream
Tssr103655	transcription start site region 103655	1592 bp downstream
Tssr103656	transcription start site region 103656	1556 bp downstream
Tssr103657	transcription start site region 103657	1506 bp downstream
Tssr103658	transcription start site region 103658	1475 bp downstream
Tssr103659	transcription start site region 103659	1453 bp downstream
Tssr103660	transcription start site region 103660	116 bp downstream
Tssr109644	transcription start site region 109644	1882 bp upstream