rs28244287 SNP Detail

Summary

• ID
  rs28244287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83008859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGGAGT TTCGTGTAGG
  TATTAAAATT TGGTGAGCCT CAGAGTCCAG CTTAGTTGTT AAAGACCATT TTCTGGATAG
  ATGCCCCCAG GGAGCATTTG AATCATAGAA ATGTTTTTTG TAGTCACAGG TGTTGTATTG
  AGATAGACCA GGTCCCAGGC TATCCCACAG ACTCTCTATA AATGATTCCA CTGCAGTTCT
  Y
  CTGAGTTCCA AATTTGCCAG TGAATATGCA TCCTCCATCA GCACATTAAT GTGAGATGTG
  GATCCTGTTG TTGTTGGGGA GTGAACCAGG GGTGCTGTCT TGGGACAGGA CCTGATTAAG
  GTAGCGCTGG ATGGGAAGGG CAGGGAGGGA ATAAGTAGCA GAGACTGCTT TCAGCGCATA
  GAAGAGGGTG GGGCTGCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142353	NES08464925	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T		T	C	C	C		C
ss323766851	CHEV_11_82931535	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244287					SNP	C	C	T	C	C	C	C	C	C	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142353	NES08464925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83008859 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
Rr247350	regulatory region 247350	258 bp distal
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	1344 bp downstream
Tssr103653	transcription start site region 103653	1236 bp downstream
Tssr103654	transcription start site region 103654	1183 bp downstream
Tssr103655	transcription start site region 103655	1151 bp downstream
Tssr103656	transcription start site region 103656	1115 bp downstream
Tssr103657	transcription start site region 103657	1065 bp downstream
Tssr103658	transcription start site region 103658	1034 bp downstream
Tssr103659	transcription start site region 103659	1012 bp downstream
Tssr103660	transcription start site region 103660	296 bp upstream
Tssr109644	transcription start site region 109644	1441 bp upstream