rs28244289 SNP Detail

Summary

• ID
  rs28244289
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83007925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAAGGA CTTCTGGAGA
  CAGCCACCAC TCCCACTGCT GTGGGTGTCT CAAGCTTTTG CCTTACTTCC TCTGGCCCGC
  AAGTGTCCAC AGCACAGCTA GCTCACAGCT AGCTCGCAGT TGACTTCAAG CAGCTGAGGG
  AACGTGCTCA GTAGAGCAGC TTAGGTAAGT GAGCCATCCT CCATGGCCGC CGCCTCTGTC
  K
  CAACCTCTCT GTCCCAGTGC CTACCAAGAA TGCATTCTGC GGGCTGTGGG ATGATGTGGG
  GCTGCCAGTA CAACCCAGAG CTCTAAGGAC AACCCTGGCT GCTTTGGTGC TTCTCTAGGA
  ACTCTGGCTC CTTGGGACCT TCATAGCCTC CATCACTGGC TGAGGAGGAC TTAGATACTA
  GGGGAGTGTG GGATGAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142355	NES08464923	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	T		T	G	G	G		G
ss323766849	CHEV_11_82930601	CHEVERUD	SCREENING_POP	f	SNP										T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244289					SNP	G	G	T	G	G	G	G	G	T	T	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142355	NES08464923	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83007925 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
LxMm-9c11	LINE repeat x, subfamily 9, member c11	1388 bp distal
Rr237031	regulatory region 237031	1525 bp distal
Rr247350	regulatory region 247350	within coordinates
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	410 bp downstream
Tssr103653	transcription start site region 103653	302 bp downstream
Tssr103654	transcription start site region 103654	249 bp downstream
Tssr103655	transcription start site region 103655	217 bp downstream
Tssr103656	transcription start site region 103656	181 bp downstream
Tssr103657	transcription start site region 103657	131 bp downstream
Tssr103658	transcription start site region 103658	100 bp downstream
Tssr103659	transcription start site region 103659	78 bp downstream
Tssr103660	transcription start site region 103660	1230 bp upstream
Tssr109644	transcription start site region 109644	507 bp upstream