rs28244293 SNP Detail

Summary

• ID
  rs28244293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83007708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTTCTG ACAGGTGGAG
  TGGCAATCAC AGAGGGGATG AAAGAGCTGA AGGAGATGTC TCACACTTCC TGGAGTGACA
  TCAACCAATG AAACCGGGGT TCTCCAAAAC TGAAATCGGG ACCTAGAGAG GATGAAACAG
  TGCAATCCAC TAAGGTCGGT CAAGACAAAA GCCGAGAGCA ACCACAGGCA CTGTAGCTCA
  Y
  CCCTCAAATC CAAGTGCTGA GAAGGACTTC TGGAGACAGC CACCACTCCC ACTGCTGTGG
  GTGTCTCAAG CTTTTGCCTT ACTTCCTCTG GCCCGCAAGT GTCCACAGCA CAGCTAGCTC
  ACAGCTAGCT CGCAGTTGAC TTCAAGCAGC TGAGGGAACG TGCTCAGTAG AGCAGCTTAG
  GTAAGTGAGC CATCCTCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142359	NES08464919	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	C		C	T	T	T		T
ss323766845	CHEV_11_82930384	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244293					SNP	T	T	C	T	T	T	T	T	T	C	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142359	NES08464919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83007708 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
LxMm-9c11	LINE repeat x, subfamily 9, member c11	1171 bp distal
Rr237031	regulatory region 237031	1308 bp distal
Rr247350	regulatory region 247350	within coordinates
Slfn1	schlafen 1	within coordinates
Tssr103652	transcription start site region 103652	193 bp downstream
Tssr103653	transcription start site region 103653	85 bp downstream
Tssr103654	transcription start site region 103654	32 bp downstream
Tssr103655	transcription start site region 103655	within coordinates
Tssr103656	transcription start site region 103656	31 bp upstream
Tssr103657	transcription start site region 103657	70 bp upstream
Tssr103658	transcription start site region 103658	92 bp upstream
Tssr103659	transcription start site region 103659	121 bp upstream
Tssr103660	transcription start site region 103660	1447 bp upstream
Tssr109644	transcription start site region 109644	290 bp upstream