rs28244295 SNP Detail

Summary

• ID
  rs28244295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83007233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCTCCT CGCTCCTATC
  ACTTTTCCCA GGCTTGTCCT TTCTGCTCAC TCCCTTCATT TTCTCTCCTC TCAACTCTAC
  AGCCTTGTCT TTCTTCTCAT AGCTGGCTTT TTGGATCTAA AATGCACTGA GCCAGGGAAA
  CTTATATTAC CAAAATTATC AAAAGAGAGG GCACAAAGAA AGAGCTGGTG AGTCTTGTCC
  R
  CTTGGGTTGC CCTTGGAACC TCCCATAGAA ACCCATCTTC CCAAAGAGTT AGGAGATGCA
  GCTTGCACCT TGTGAGCCAG CATCCTACTC TGCCTCCCCT GGCTCAGCTT CCCTCTCCAA
  TCATCTTCCT CCCTGGAGAG GCTTCAACAG GTGCTCATGC TGTGCCTAGT GTCACCTGCT
  CTTCTGAGGG TCAGGACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142361	NES08464917	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	A		G	G	G	G		G
ss323766842	CHEV_11_82929909	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244295					SNP	G	G	A	G	G	G	A	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142361	NES08464917	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83007233 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
LxMm-9c11	LINE repeat x, subfamily 9, member c11	696 bp distal
Rr237031	regulatory region 237031	833 bp distal
Rr247350	regulatory region 247350	within coordinates
Slfn1	schlafen 1	442 bp upstream
Tssr103652	transcription start site region 103652	273 bp upstream
Tssr103653	transcription start site region 103653	381 bp upstream
Tssr103654	transcription start site region 103654	402 bp upstream
Tssr103655	transcription start site region 103655	461 bp upstream
Tssr103656	transcription start site region 103656	506 bp upstream
Tssr103657	transcription start site region 103657	545 bp upstream
Tssr103658	transcription start site region 103658	567 bp upstream
Tssr103659	transcription start site region 103659	596 bp upstream
Tssr103660	transcription start site region 103660	1922 bp upstream
Tssr109644	transcription start site region 109644	183 bp downstream