rs28244299 SNP Detail

Summary

• ID
  rs28244299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83006364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTCTGA TGGTTACCTT
  ACTCATCCCA CAGTCGCCCT CTGGTGTCCA TGAATATACG TGTATATACA GATCTGGATT
  TTGCAAATTA GAGAAACATG CAATATTTGT CATTTGTGGC TACTCCAGCT TCTCTCATTT
  CTTTTTCCTC CTCCCTTTAG ATACCTTCTT CAAGCAACAG TGTGAAATTC CATAGAGGTG
  M
  GATGCTAGGC ATATTTGCAT TTCCAGGTCA TTTTCTTCAG CACAGTGAGT GTTTCCTCTT
  CACTTCTGTT TTCATTCCTG GAAAGGACAT GATTTCACTT TTCTTTACAT CTGAATGGCA
  TTTCACTATG CATGTATGAG TATGCATATA CCACATAAGT AAAGCATTCA TACCAGTATA
  TATTTTGCAA CATCTGAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142365	NES08464938	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	A	A	A	A	C		A	A	A	A		A
ss323766839	CHEV_11_82929040	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244299					SNP	A	A	C	A	A	A	A	A	A	C	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142365	NES08464938	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83006364 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	818 bp downstream
LxMm-9c11	LINE repeat x, subfamily 9, member c11	within coordinates
Rr237031	regulatory region 237031	within coordinates
Rr247350	regulatory region 247350	836 bp proximal
Slfn1	schlafen 1	1311 bp upstream
Tssr103652	transcription start site region 103652	1142 bp upstream
Tssr103653	transcription start site region 103653	1250 bp upstream
Tssr103654	transcription start site region 103654	1271 bp upstream
Tssr103655	transcription start site region 103655	1330 bp upstream
Tssr103656	transcription start site region 103656	1375 bp upstream
Tssr103657	transcription start site region 103657	1414 bp upstream
Tssr103658	transcription start site region 103658	1436 bp upstream
Tssr103659	transcription start site region 103659	1465 bp upstream
Tssr109644	transcription start site region 109644	1052 bp downstream