rs28244300 SNP Detail

Summary

• ID
  rs28244300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83006325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTCACC TCCCCTTTTT
  CCTCCCCTCT TCTTCCTCTT CTCTTCTGAT GGTTACCTTA CTCATCCCAC AGTCGCCCTC
  TGGTGTCCAT GAATATACGT GTATATACAG ATCTGGATTT TGCAAATTAG AGAAACATGC
  AATATTTGTC ATTTGTGGCT ACTCCAGCTT CTCTCATTTC TTTTTCCTCC TCCCTTTAGA
  Y
  ACCTTCTTCA AGCAACAGTG TGAAATTCCA TAGAGGTGAG ATGCTAGGCA TATTTGCATT
  TCCAGGTCAT TTTCTTCAGC ACAGTGAGTG TTTCCTCTTC ACTTCTGTTT TCATTCCTGG
  AAAGGACATG ATTTCACTTT TCTTTACATC TGAATGGCAT TTCACTATGC ATGTATGAGT
  ATGCATATAC CACATAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37142366	NES08464937	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T		T	T	T	T		T
ss323766838	CHEV_11_82929001	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28244300					SNP	T	C	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142366	NES08464937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83006325 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	857 bp downstream
LxMm-9c11	LINE repeat x, subfamily 9, member c11	28 bp proximal
Rr237031	regulatory region 237031	within coordinates
Rr247350	regulatory region 247350	875 bp proximal
Slfn1	schlafen 1	1350 bp upstream
Tssr103652	transcription start site region 103652	1181 bp upstream
Tssr103653	transcription start site region 103653	1289 bp upstream
Tssr103654	transcription start site region 103654	1310 bp upstream
Tssr103655	transcription start site region 103655	1369 bp upstream
Tssr103656	transcription start site region 103656	1414 bp upstream
Tssr103657	transcription start site region 103657	1453 bp upstream
Tssr103658	transcription start site region 103658	1475 bp upstream
Tssr103659	transcription start site region 103659	1504 bp upstream
Tssr109644	transcription start site region 109644	1091 bp downstream