rs28248631 SNP Detail

Summary

• ID
  rs28248631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:92598336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATCTTC ATTTGTTCAG
  TCAGTTGGCA TGTGGACAGG TGACACTAGT ACCCAGCTAT GTTGGCCATT TCTACTGCAA
  CTTCCAGGCT GAGCAGTAGG GTCCTCAAGG CTCGGCTGTT GCCTGGGCAT TCCTTAAATG
  GCTATTTTTA TTTATTTGTT TGTTTATTCA TTTTAAATGT TACTGGTTGG TGCTAGATCA
  Y
  GACTCAAGCA ATTAAAAAGA AAAACCCCAA ACCATCAGGA GCCAGTGTTA GAAAATACAC
  AAGAGAGTTT CACACTCCCA GCCCAGATGG TCCCAACCTT GAGACATAGA GCCAGAGACC
  CAGATCTTTG CCAACATTCA AGTCTGTCTG TCAGTGCATG GAGGTCCTAA GCACCCCTGG
  ACTTCCTGGG ACTCTGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37601550	NES09096531	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28248631					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37601550	NES09096531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92598336 () rs orientation: forward

Symbol	Name	Function Class
Rr560991	regulatory region 560991	99 bp proximal