rs28248635 SNP Detail

Summary

• ID
  rs28248635
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:92597020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAAAGGC GTATTTTCCA
  ATCAGAGGCC AGAGTGGGCA TCTTTGCCTA ATTGGCATAG AAGTGCTCTA GGATACAGCC
  CTGTGTGCCC CAGCTGTTAT GTGAGGGGCA CAGGGCAAGA TTTCAAGCCA AATCTCTCAT
  CTGGGGACCA CAGAGGCTGG ATTCTTCCAT CTAAGTTCCC TCTTGGGTGC CATGGTCATT
  W
  ACAGTGTTCC AGAAATCCCA TTTAAAATGA AGCATCCTCG GGAACAATAA TGCCCTAAAA
  ATAATCAGCC CTTATCATCA TTTCCATGAT CATTGCCACA ATTATTTTAG ACCTTGAGTG
  GATTAGCAGC CATCAGGCAG AAGGCAGAGT AAACCCCAAG GATAGTGGGG GAAGGAGCCA
  GAAGTGAGAC AGGTAAGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37601554	NES09096550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28248635					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37601554	NES09096550	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92597020 () rs orientation: forward

Symbol	Name	Function Class
Rr560991	regulatory region 560991	1415 bp proximal