rs28249451 SNP Detail

Summary

• ID
  rs28249451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153443126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGTTGGGC GTGGATCTGG TGGGCGTGGC TCCAAGCAGA
  TGAAACTGAC TGCACACGTC CATGCTGGGT GAGGACAGAA GTGGCTAGAG CTTCCCTGAC
  R
  AATGAAGCTG TTGTGGAGCT GCTGAGAATA CCGAGAAGCC CTTGGACAGG TCGGAGGGCA
  GGAGAGCAGA AACAGGCCGG CCTCCCTCTT TCTGACTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37559476	NES08906050	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G		G	G	G	A	G
ss147998125	ENSMUSSNP946457	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28249451					SNP	G	G	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559476	NES08906050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153443126 () rs orientation: forward

Symbol	Name	Function Class
Gm75178	predicted gene, 75178	within coordinates
Rr567697	regulatory region 567697	14 bp distal
Rr567698	regulatory region 567698	within coordinates
Tssr20902	transcription start site region 20902	23 bp downstream