rs28249639 SNP Detail

Summary

• ID
  rs28249639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153361345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCTACCT CAGATCAGCC CCTGCCTCCA GCTCCGCACT
  GCTCTACCTC CACGAAGAAA GCATCAGCGT CAACCTGAAG GCTTGCGAGT GCAGCAGGCA
  Y
  GGGTCTTGGG TTCTAACAAC ATCACCAAAA CAAAACCACC CATAAACGCC CCCCCCCCAC
  TCCCGCAGCC CCTCAACCCA GGGTTTCAGA GAAGCTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37559666	NES08908079	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	C	C	C
ss147995262	ENSMUSSNP4109123	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs28249639					SNP	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37559666	NES08908079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153361345 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567666	regulatory region 567666			1928 bp distal
Rr567668	regulatory region 567668			427 bp proximal