rs28250490 SNP Detail

Summary

• ID
  rs28250490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127741774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAAGAGC TATAGGGATC
  ATGAAACATG GAGTCCTGAG AGGCGTTCAT GATAGTCCCA CATAATAGCA AGATGTGACT
  TATCCCTGAG GACAGAAGCA GGAAATGGTA TGGTTGGGTT GGCTCAGTTG GTTTGCAGGA
  GGGACAGGGT GTGGCAGTGG AAGCGATGCC TACTGAGAAG GTTTGAATCA GGTGAGTCTG
  R
  GAGATGAGTG TGGAGGAGAT TGGAAAAAGG AAGGCTTGCC AGAGAGAAAC CCCCTTCTCA
  CTACTGTTGG GTACCCGGAA CATGACCAGA AACTTCTCAT GAAGGAGATT GACAATCTAC
  CTTTAAATAT CACCAACTAG CCAACCCAAG GTATCTGTAT GGGAAATGTT ACAGCAGAAA
  TGCCTGGATT TTACCCAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627613	NES09004012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28250490					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627613	NES09004012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127741774 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Rr564612	regulatory region 564612	1820 bp distal