rs28250494 SNP Detail

Summary

• ID
  rs28250494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127740925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCAGTGTA AGTCCCAGCC TGTGGATTGT GCCACACCAG
  TTAACCTTTT CTAGATGGTC CCTCATAGGA ATGCCAGATG GTTTTCTCTA GGGTGATTGA
  Y
  TTTAAACATA GGTGGACACT TGACCTTGAC ATGAAAGCTG ACATTTCTTG ATCAGAGATG
  GGGAAGAGGA AAAGCAGTCT GGAAAGAGGA GGAACGATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627617	NES09004028	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	T		C	T	C	C	T	C	C	C
ss45299938	mCV23903746	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss147544604	ENSMUSSNP6084079	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C							T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28250494					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627617	NES09004028	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127740925 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Rr564612	regulatory region 564612	971 bp distal