rs28250496 SNP Detail

Summary

• ID
  rs28250496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127740070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGAGAGCGT AGACTTTTAC AACTATTTGC ATATCTCATT TCCTTGCCTA ATCAGTGTTG
  TGAGAATAAT GTCCCACTTT CCATGCTTGA GTGATCAGCT GCAGTTGCAG CAGGCACCAG
  GGCTGGCTCG CCACAGCATT TCCCTTTCTT ACATTCCCTC TCATCCCAGC TTTGCTGCAA
  CCCATGCACT GGGCTTTCTG AAACAGAACT CATCTCACCA GCAAAATGAC ACCTTTCATG
  GGCATGGTAT TTGCCCTCAA TTTAAAGGGC ACTGTTTCAC AGCTGCATGA TGGGTACAAG
  Y
  GTCCTCCTTG AATGTGCTCA GTGAAGGTGT ACTGTGCCTA GACTCCACAT TAAAACTCCT
  TTAAGGAAAG GAGGGAGAGC CATTAGGTTT AAGGATGGCT TTTTTGATAT GTTCCTATGA
  TTACTCATGA CCTTACAAAT TGTTTAGTTT ATAGATCACA ACTAGGCTAA AGATGTCAGG
  TGCCTCTTTT CATCCCACCC CAATGGTGTT GATGGCGGTT GGTGAGCTTT TATGGTAAAT
  AAAGCTCTTT ACTTGAGCCT TACAAGGAGT CCCTTTGTAG ATTTTAGCAT AATCTTAGTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627619	NES09004062	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	T	C	C	T	C	C	T	C
ss45376128	mCV23903724	ABI	CRAMUS_MOUSE	f	SNP	C	C					T
ss147544583	ENSMUSSNP261833	ENSEMBL	ENSEMBL_Sanger	f	SNP							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28250496					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627619	NES09004062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127740070 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Rr564612	regulatory region 564612	116 bp distal