rs28250499 SNP Detail

Summary

• ID
  rs28250499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127739062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTATGCT AAGGAAATTC
  AGGAGGACAG AAGGGAGCTA TGCATACTAG TATCTACAGT GGGCTGGACG ACTCCCCAGT
  ACACATGTTC TTACTCAATG ACTGCTGCAG CTTCACCACA ATGCCTCTTT TCAAATGGAA
  GAGAGAGGAT CTGGGAGGTG GGGTGGCTTG GCAGTGGTGT TCCATGGCCA GCCTTGTCCT
  Y
  CTTTGACTTC AGTCTCTATC AAAATGTTAT AGTTGGATAT AGTGATATAT AACTTTAATC
  CCAGTACTCA TTAAGCATGG GTTAGAAGAT CTCTGTGGGT TTGAGGCCAG CCTGGTCTAC
  ATAGTAAGCT CTGTAGTAGT CAGGACTTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTTTTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37627622	NES09004162	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	T	T	T	T		T	T	T	T		T
ss320501018	CHEV_2_127722878	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28250499					SNP	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627622	NES09004162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127739062 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Rr564612	regulatory region 564612	633 bp proximal