rs28251182 SNP Detail

Summary

• ID
  rs28251182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:104919743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAAAGCCT ATTTTAAGCA GAAGGCCCCC ATTAGGGTTG
  AAGCATCCGT CTATCTCATC ATTAGCTGGG AGAGCCTTAG GCTCTGAAAG ACTCCCCATT
  R
  CTGGTTGGAA ACCCAGAGAC AGAGGGCAGG CTGTCCAGAG CTTCTGGGAT TCTGAGATGG
  CAGCGGCTTG CAGGGCAGGT GTTGGTAGTT CCTTTGAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37618401	NES09073252	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A		G	A	A	A	A	A
ss45249849	mCV23749436	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				A	G
ss147159503	ENSMUSSNP1973106	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28251182					SNP	A	A	G	G	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37618401	NES09073252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104919743 () rs orientation: forward

Symbol	Name	Function Class
Rr562162	regulatory region 562162	514 bp proximal
Wt1os	WT1 transcription factor, opposite strand	within coordinates