rs28252239 SNP Detail

Summary

• ID
  rs28252239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138946614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTTCT TCATGTTCTA
  AAATTGAGTT GTATTTATTT ATAAAAGCTG GAGGTTTATA TTTAATGAAC ACACAAAAAG
  GCACAAAGAG AGAGAGAGAA AGAGAGAGAG AGAGAGAGAG AGAGATCTTC TATTCTATGA
  CTGAGATTTA TAACTTTCTG TGCTCAGTGG GACTTCTTAA AGCATACTTG TGTGGCTTAA
  M
  TTGACTTTGT ACTTTAGTGA TGTGTCATGA GAAATATATA CCTGCAATAC TGATCTTGAA
  AACTACATAA CATTAGTAGA GACTCCAGAA GAGATGTATT GAGGAAAACA TAAATTTATT
  CCAGAACTTT GATTAAGGCT TATGGTAAAG ACTCATAGAA ATTTGAGATG ATTTAGTATA
  TATTTTATAG TATGGCTGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37441863	NES08965511	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28252239					SNP	C	C	C	C	C	C	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441863	NES08965511	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138946614 () rs orientation: forward

Symbol	Name	Function Class
Rr566007	regulatory region 566007	1607 bp distal