rs28252242 SNP Detail

Summary

• ID
  rs28252242
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138945755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTGACA TGTGAAGTCT
  TTGAACTATT GCTGATGCTC ATTATGTAGT GACAATGTTT GGACCAATAG CATAATTTAA
  GAAATAATTG TGAGGGCTTG ATAGCTAATA TTATAAAGAG TTTATAAAAC AATACAAGGC
  AACCACTCAA ATGAGGTCAG ATTAGTGGGG AAAAGCTGGT GTGCTGCAAA ATCTGCACCC
  M
  GTGTGAGTCC TTCCATAATC TTCACTTCTG TTTTAATTTA CCAAAATACA AAAATGATAA
  AGGGGGGACA AATAGAAGGA TTGGTAGAGT GCTGGCCTAA CATGCATGAA GCCTTGACTT
  TTAATTCTCA GCCAGCACCA TGTAAATAGG GCATGGAGAT ACATGCCATT ACTCAGCGTT
  GCAAAGGTAA GGGAAGAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37441866	NES08965567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A		A	A	A		C
ss320526187	CHEV_2_138929571	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28252242					SNP	C	C	C	C	C	A	C	C	A	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441866	NES08965567	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138945755 () rs orientation: forward

Symbol	Name	Function Class
Rr566007	regulatory region 566007	748 bp distal