rs28252243 SNP Detail

Summary

• ID
  rs28252243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138945192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGACTCAA TAGCTGAAGC
  TGCCTTTTTG TGACTTGTAT TCACTGGCCA AATATTTTAG AAAAGTGATT TCAATTAGTT
  ATTAAATTTA GGGGTTTTTT GTTTTGCTTT GTCTGTTTTG CTGTTGTTTG TTTGTTTGTT
  TGTTTGTTTG TTTTGGTGTC TATTGCTAAA TATCACTACA ATCTATGGTT TAGGTAACTG
  Y
  CACACAAAGG CTTGTCCATT AGAATCTTGA ACAAAAATCA TGCCAATATT ATGATATGAT
  AGATCCTTAA AAGATGTAGT CTGATGGAAT AAAATTAGAA CTTTAGAGAA AGTGCCCTAA
  AAGAATTTGG GGGTGTAGTC CATTCTTATC ATTCTTCTTT CTCTAACCTA AAATGAGAAG
  CTACTTTAGA TACATGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37441867	NES08965566	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C		C
ss320526184	CHEV_2_138929008	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28252243					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441867	NES08965566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138945192 () rs orientation: forward

Symbol	Name	Function Class
Rr566007	regulatory region 566007	185 bp distal