rs28252245 SNP Detail

Summary

• ID
  rs28252245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:138944961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATCCAA TAGAATGTCT
  CTTGAAACTG ATTTTTATAT ATCAAACTGG TTGCTGCTAA CGTTCTGACA CTTTGTCTTA
  ACACTCTCAT CATACACTGC AATATTTAGT TGTGCAGCTG CCACAGAGCT TCAGCTTGTA
  AGATGGCTCA GTCTTTGGGT GTGGGTTGTC TGAGATCACA CATCTTCATA CTCACTGCTT
  Y
  GGTTGCCATG GCATTTTGTA AACATAGAAC ATTGACTCAA TAGCTGAAGC TGCCTTTTTG
  TGACTTGTAT TCACTGGCCA AATATTTTAG AAAAGTGATT TCAATTAGTT ATTAAATTTA
  GGGGTTTTTT GTTTTGCTTT GTCTGTTTTG CTGTTGTTTG TTTGTTTGTT TGTTTGTTTG
  TTTTGGTGTC TATTGCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37441869	NES08965564	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	C	C	T		T
ss320526183	CHEV_2_138928777	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28252245					SNP	T	T	T	T	T	T	C	T	T	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37441869	NES08965564	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:138944961 () rs orientation: forward

Symbol	Name	Function Class
Rr566007	regulatory region 566007	within coordinates