rs28253268 SNP Detail

Summary

• ID
  rs28253268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78073747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTCCGAG GATATTTTGG CTGCCTCCGG AGCCGCAGGG
  TCTTGGGCCG CCGGAAGGTG GGTGACGTTC GGATCTTCTT CTTTTTGTGG CTGTGGACGC
  Y
  TTTCAGCACC GCCTTCTTAG CTTTCAAGGC CTTCGCTTTG GCTTCGGCTT TGGGAGGGGC
  AGGAGCTGGG AGAGGACAAT TAAAATTAAG TGTGGCATTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37153306	NES08473218	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28253268					SNP	T	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37153306	NES08473218	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78073747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3335	CpG island 3335	218 bp proximal
Rpl23a	ribosomal protein L23A	within coordinates
Rr402760	regulatory region 402760	517 bp upstream
Rr451902	regulatory region 451902	103 bp proximal
Rr451903	regulatory region 451903	323 bp proximal
Rr451904	regulatory region 451904	653 bp proximal
Snord4a	small nucleolar RNA, C/D box 4A	1165 bp upstream
Snord42a	small nucleolar RNA, C/D box 42A	1575 bp upstream
Snord42b	small nucleolar RNA, C/D box 42B	138 bp downstream
Tssr109378	transcription start site region 109378	251 bp downstream
Tssr109379	transcription start site region 109379	630 bp downstream