rs28257527 SNP Detail

Summary

• ID
  rs28257527
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25170091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACAACA CAATACATAC
  ATACATACAT ACATACATAC ATACATACAA TACGTAACAA AAGACCAAAC CTCAAGCAGC
  CAAAACGACC ACACTCTGAC CTTAGTGTTG TGCTTCCTGC CTTCCCTTCA GCCCAGGGTA
  TCCTGAGCGG GTGGGTTGTC TGGCCCAGCT GTCTGCTTAG GGTACTGGTT GAAATGGAGT
  M
  ATAGTGCAGC CCCTCCCAGA AACAAGGACA AACTTTTGTC CTTCCAGGGA GATTCGTAAT
  GTGGAGCTGT TGAAGCTGCG CTTTGGTGAA GCCCCCATGC ACTTCTGTGA GGTCATGCTC
  AAGGTAAATA CCCAGGACTG CCTCAGCAGT CGCGCCTACC ACCACCAGTA GGCCCAGGCT
  CTTGATAAGG TATCCTTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37423142	NES08780899	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28257527					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37423142	NES08780899	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25170091 () rs orientation: forward

Symbol	Name	Function Class
Anapc2	anaphase promoting complex subunit 2	within coordinates
Gm75663	predicted gene, 75663	within coordinates
Rr553043	regulatory region 553043	731 bp distal