rs28257546 SNP Detail

Summary

• ID
  rs28257546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25161683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCAGCTG TCCTTGCCTC
  CACTACTCTT CTGGTCTGAA GCTGTGGCTT TAGTCAGGTT CCCAGCTTCT CTTTTGAGTA
  CACTAAGCAG AGTCTGAGAG CTCTCCAGGA TCTGGGGCCA GAGAAATAAA AGGATGTTAT
  TTCTCTGGTA GGAAGGTCCC ATTGCCTCAG GCTCTAATAA TGGAGGATGG AAATCTCAAT
  Y
  TGGTCATCTG TGCTGTAGCC AACTGGTTAT GGAGTAAAAC CATCCTCCCT TCTGCACCTG
  TCCCAGAGCT CTTCCACCCT GCAAAGCCAG GCTGGGTTAA TTCAGGCCCA CACCGTGTAC
  TCTGTCCAAT ACACCAATGC TCACTTTTGG AACCCACAGA CAGCCCACTG TTCCACCTAC
  AGCCTCTGAA CCACAATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37423162	NES08781058	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28257546					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37423162	NES08781058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25161683 () rs orientation: forward

Symbol	Name	Function Class
Anapc2	anaphase promoting complex subunit 2	807 bp upstream
Cpgi11305	CpG island 11305	45 bp proximal
Rr553042	regulatory region 553042	735 bp proximal
Ssna1	SS nuclear autoantigen 1	within coordinates
Tprn	taperin	1786 bp downstream
Tssr16691	transcription start site region 16691	791 bp upstream
Tssr16692	transcription start site region 16692	804 bp upstream
Tssr16693	transcription start site region 16693	816 bp upstream
Tssr22958	transcription start site region 22958	665 bp downstream
Tssr22959	transcription start site region 22959	709 bp downstream